A viral hit? The sequence of coronavirus makes surprisingly lovely music

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Mark Temple, Western Sydney University

All my life I’ve been involved in music and molecular biology. At the crossroads between science and art, I see great scope for insight.

My latest research, published in the journal BMC Bioinformatics, reveals how music can be used to reveal functional properties of the coronavirus genome.

This project followed earlier work I had done generating audio from human DNA sequences; this time, I wanted to apply those techniques to the virus sweeping the world to see what might be revealed. In other words, this was the difficult second album!

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Assigning notes to the ‘words’ in the genome

Genes of the coronavirus are like biological book chapters; they hold all the words that describe the virus and how it might function. These “words” are made from strings of chemical letters scientists refer to as G, A, U and C.

This viral “book” is over 30,000 characters long. Some of these characters come together to form what scientists call a codon, which is a sequence of RNA that corresponds to a specific amino acid. But to stick with our analogy, let’s just say they come together to form “words”.

In my work, I assigned notes to these words to generate audio; I had wondered if this might helps us understand what the words mean.

I devised an online tool to hear the sound of coronavirus doing two things most genomes do: the first is called “translation”, which is where the virus makes new proteins. The second is called “transcription”, which is where the genome of the virus copies itself.

Sounds of the coronavirus genome.

There are several things you can hear: the start and end of genes, the regions between genes and the parts of the genome that control how genes are expressed.

Other researchers have written about this extensively in the coronavirus scientific literature but this is the first time you can distinguish between these regions by listening.

Revealing relationships between structure and function

So, what’s the point of all this?

As a research tool the audio helps supplement some of the many visual displays that exist to represent genomic information. In other words, it helps scientists understand even more about the virus and how it operates. Recently, UK-based composer and researcher Eduardo Miranda at the University of Plymouth used DNA sequence data for music composition and to better understand synthetic biology. Researcher Markus Buehler at MIT has been working with musical representations of proteins to enquire about novel protein structures.

I think an equally valid question is: does the audio sound musical? Now that I have finished the scientific research part of this project, I listen to the coronavirus genome with fresh ears, and from a musician’s perspective I been surprised as to how musical it sounds.

I don’t mean to trivialise the pandemic by thinking about the virus in musical terms.

As a molecular biologist at Western Sydney University, when I think about the virus I see RNA sequences, and it’s my job to see relationships between structure and function. I don’t see patients in the clinic and I’m not researching a cure — these things are not my domain.

Taking the genome to the recording studio

As a musician, I have also taken the audio data into the recording studio, away from the research lab, to reveal other perspectives on the coronavirus.

The coronavirus audio is pulsating and incessant, but, working with other musicians, we have tried to tame the sequence; to make it subservient to our musical knowledge, ideas and human spirit.

I returned to the trusty drum kit that once drove my old band The Hummingbirds and this now beats the viral sequence into submission. With guitar by Mike Anderson, who is in Sydney-based instrumental surf twang band Los Monaros, we have reached an understanding of its jagged rhythms and syncopated pulses to create some music.

Sonification can reveal new perspectives on the function and structure of the coronavirus genome.
Author provided, Author provided

We mixed the computer-generated audio from the coronavirus genome with real guitars and drums played by real people. The result sounds more musical than I thought it would and it reminds me of the pulsing music of US composer Steve Reich. I still hear genes and other viral characteristics within the science data but music wins out in the rehearsal studio.

As a musician, this project has been rewarding but as a scientist, I hope sonifying the coronavirus genome helps people think about its function in new and helpful ways.

I was also challenged to create something almost beautiful out of something so awful. Let’s hope we will soon be able to return to work and live music more “normally”, to the parts of life that engage us intellectually and creatively.

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Music-making brings us together during the coronavirus pandemic

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Mark Temple, Senior Lecturer in Molecular Biology, Western Sydney University

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Time doesn’t heal all wounds: how DNA damage as we age causes cancer

Our risk of cancer is determined by a complex mix of genes, environment and lifestyle factors.
Claudia van Zyl

Ian Majewski, Walter and Eliza Hall Institute and Edward Chew, Walter and Eliza Hall Institute

As we age, our bodies inevitably deteriorate. Some changes, like grey hair and wrinkles, are easily visible. Others, like high blood pressure, often go unnoticed, but can be deadly.

Just as our body shows signs of ageing, so does our genome. Damage comes from chemical reactions that alter our DNA, and from errors introduced when it is copied. Our cells protect against these ravages, but these mechanisms are not foolproof and cells gradually accumulate DNA damage over a lifetime.

As a consequence of this damage, your genome is not the same in every cell; you are a patchwork of cells with subtle differences in their DNA. When a cell divides it will pass on these changes, and as they accumulate there is more and more likelihood that there will be consequences.

If these changes – we call them mutations – chip away at the systems that govern cell proliferation and survival, this can lead to cancer.

Our latest research, published today in the journal Blood, provides new clues about how our cells protect their genome and guard against cancer.

Guarding the genome

Nearly 10% of cancers have a familial component. Genes like BRCA1 and TP53 are among the best known cancer susceptibility genes, and both are involved in coordinating the cell’s response to DNA damage.

BRCA1 helps to repair a specific type of DNA damage, in which both strands of DNA are broken. Inheriting a defective BRCA1 gene elevates the lifetime risk of both breast and ovarian cancer.

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When DNA repair mechanisms break down, cells can accumulate staggering numbers of mutations, and cancer becomes almost inevitable.

Beyond genetics, a complex mix of environmental and lifestyle factors modify cancer risk.

When we read the genome of a cancer it is possible to attribute mutations to certain types of stress. UV radiation, for example, will fuse certain DNA bases. The UV damage signature is writ large in melanoma, a cancer linked to sun exposure.

Lung cancers from smokers and non-smokers have different mutation patterns because of the action of chemicals in cigarette smoke that attack the DNA.

We can also use this approach to diagnose defective DNA repair, as each defect triggers a characteristic pattern of mutations. In this way, mutation signatures can help us understand why a cancer has developed.

A ticking genetic clock

Smoking, UV radiation and X-rays all damage your DNA, but damage also comes from reactive molecules present within the cell. These molecules are fundamental to the chemistry of life – take water, for example.

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Chemistry Nobel DNA research lays foundation for new ways to fight cancer

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Water is a very reactive molecule and can do damage to our DNA. One of the most common mutations, either in cancer or in normal cells, results from water molecules reacting with methylated DNA.

DNA methylation is a small chemical modification that acts as a signpost on top of our genetic code. It helps to control which genes are switched on or off. This fine-tuning is essential for normal development, but methylation also makes DNA more susceptible to damage. Most of these events are quickly repaired, but the damage is unrelenting and some sneak through.

Cells accumulate mutations when DNA repair mechanisms break down.
K.D.P/Shutterstock

Methylation damage is the most prominent feature of an ageing genome. It’s so pervasive and reliable it has been proposed as a molecular clock that marks ageing. But our new research shows this process occurs more rapidly in some people.

We found and studied three people whose pathways to repair methylation damage had broken down. They all lacked a DNA repair protein called MBD4, which led to a marked accumulation of methylation damage – as though their cells were ageing prematurely.

All three developed an aggressive form of leukaemia in their early 30s, a cancer which usually wouldn’t be seen until the person is in their 60s or 70s.

Methylation damage plays a role in most cancers, but in these cases it was the primary driver of the disease.

While complete inactivation of MDB4 – as occurred in the three participants – is extremely rare, our findings raise the question of how more subtle differences in DNA repair shape cancer risk, particularly in the context of ageing.

Turning back the clock

Ageing contributes to cancer risk in myriad ways. While we’ve focused here on the buildup of DNA damage, our immune system also plays an important role and tends to fade as we get older.

Lifestyle factors – such as obesity, stress and diet – also provide a cumulative risk that builds over a lifetime.

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Read more:
What does DNA sound like? Using music to unlock the secrets of genetic code

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Understanding the interplay between these factors is key to finding strategies that will effectively diffuse the health consequences associated with ageing.

Our research is helping to tease apart the contribution of DNA damage in different disease processes. Our findings suggest that some people accumulate more DNA damage than others – their clocks are ticking a little faster – and measuring these differences may help to spot people at risk of developing cancer, or help match them with more effective treatments.

Ian Majewski, Laboratory Head & Victorian Cancer Agency Fellow, Cancer & Haematology Division, Walter and Eliza Hall Institute and Edward Chew, PhD candidate, Cancer and Haematology Division, Walter and Eliza Hall Institute

This article is republished from The Conversation under a Creative Commons license. Read the original article.

Muslim Boys in Pakistan Accused of Raping Christian Girl

DNA results match their semen samples in case filed by family of fatherless 14-year-old.

LAHORE, Pakistan, June 3 (CDN) — Forensic DNA results of semen samples in a sexual assault case show they match those of the Muslim boys a 14-year-old Christian girl accuses of raping her, according to advocacy organizations.

The girl accuses Muhammad Noman and Muhammad Imran, both 17, of abducting her from her school in Kamboh colony, Lahore, in Punjab Province, on May 6 and drugging her prior to sexually assaulting her, according to Khalid Gill, president of the Christian Lawyers Foundation (CLF), and officials of the National Commission of Justice and Peace (NCJP).

The minor, whose name was withheld, told the organizations that she was waiting for her younger sister at the main gate of S.M. Foundation School after class hours when Noman and Imran told her that a girl named Hira wanted to see her.

The girl said that she told them she was not familiar with anyone named Hira, but that she was not afraid because there was no problem meeting a girl. She told the NCJP that as she stepped off the school grounds, Noman and Imran overpowered her, tightly covering her mouth to stifle her cries for help. Later they gagged her with a band of cloth.

NCJP General Secretary Peter Jacob reported that they took her by motorbike to a place unknown to her and compelled her to consume a soft drink containing tranquilizers. Able to see but unable to move as she began to lose consciousness, she was unable to stop them as each boy raped her, she told the NCJP. She said she later became totally unconscious.

The CLF’s Gill said the boys later left her on a road near the school’s main entrance.

The girl’s father, Rehmat Masih, is deceased. Her mother, Aysha Bibi, said that she had fearfully begun searching for her and had contacted a school administration official, who said that her daughter had left the school on foot. Several Christian neighbors also participated in the search.

Christian neighbor Shehzad Masih found her unconscious on the road near the school gate and brought her home, according to the NCJP’s Jacob. As the 14-year-old regained consciousness, her mother and others brought her to the Millat Park Police Station and filed an application to register a case against Noman and Imran.

After investigating, on May 9 Millat Park Police registered a case against Noman and Imran for abducting “with intent to commit adultery.”

Although Muslims commonly commit crimes against Christians in Pakistan assuming law enforcement officials will not prosecute, the two boys were arrested on May 26. Police sent DNA samples of the semen of both Muslim youths to a forensic laboratory, and the results linking them to the crime returned this week, CLF and NCJP’s Jacob said.  

A urine test indicated the girl was not pregnant, CLF and NCJP officials said.

Report from Compass Direct News

New Dimension in India’s Anti-Christian Violence Feared

Concern grows that Hindu terrorists could become more apt to target Christians.

PUNE, India, November 5 (CDN) — After the recent arrests of numerous Hindu terrorists for exploding bombs, authorities increasingly view Hindu rightwing extremists as a threat not only to Muslim and Christian minorities but also to national security.

Historically Hindu terrorist groups have traded blows with India’s Muslim extremists, but because of a perceived threat from Christianity – as one Hindu extremist leader expressed to Compass – many analysts believe Hindu terrorists increasingly pose dangers to Christians as well.

Police in Goa state arrested two members of Hindu terrorist group Sanatan Sanstha (Eternal Organization) on Saturday (Oct. 31) for their alleged role in an explosion that took place near a church in Margao on Oct 16. Christians, which make up more than 25 percent of the 1.3 million people in Goa, were apparently not the target of the explosion, which occurred accidently when two members of the Sanatan Sanstha were trying to transport explosives to a nearby location on the eve of the Diwali Hindu festival, according to DNA newspaper.

Nevertheless, the incident served as a wake-up call to Christian leaders and others who fear Hindu terrorists could take greater aim at the Christian community. John Dayal, secretary general of the All India Christian Council (AICC), said that while terrorism was not new for rightwing groups, some of the extremist groups had “metamorphosed into fully fledged terrorism squads on classical lines – cells with local leaders, supply lines, bomb-making experts, and clear linkage with the intellectuals and motivators in the RSS [Hindu extremist Rashtriya Swayamsevak Sangh] hierarchy.”

Suresh Khairnar, a civil rights activist who has conducted nearly 100 fact-finding trips on communal incidents, told Compass that Muslims may be the main target of Hindu terrorist outfits, but “there is no doubt that they pose a threat to the Christians also.” He added that these Hindu groups also launch attacks on Hindus from time to time – masquerading as Islamist groups to create communal unrest, as well as to confuse investigating agencies.

Asghar Ali Engineer, chairman of the Centre for Study of Society and Secularism in Mumbai, concurred that Christians have increasingly become a secondary target for rightwing Hindu terrorists behind Muslims, who form 13.4 percent of the population.

“Christians, on the other hand, are only 2.3 percent,” said Engineer. “And because of their engagement with education, medicine and social work, it is difficult to promote anti-Christian sentiments.”

A former inspector general of police of Maharashtra, S.M. Mushrif, also said that while Muslims are the prime target of Hindu terrorists, attacking Christians also helps the Hindu assailants to portray themselves as “working for a Hindu cause.”

Members of suspected terror groups are known to have attacked Christians. On June 27, Shailendra Chauhan, alias Uday Singh – suspected to be a close aide of Sadhvi Pragya Singh Thakur, the prime suspect in a September 2008 blast in Malegaon, Maharashtra – was arrested for allegedly killing a Christian priest in Noida, a satellite town of Delhi. The 25-year-old Chauhan was also accused of vandalizing a church building in Sangam Vihar in Delhi in October 2008, according to The Times of India.

The AICC’s Dayal added that Islamic groups are the immediate target of Hindu terrorist groups, “but once the terror gangs of Hindutva [Hindu nationalist ideology] taste blood, it is easy to predict that they will swing into action against any perceived enemy target.”

How Alleged Terrorist Group Views Christians

The Anti-Terrorism Squad (ATS) of Mumbai is investigating powerful bomb blasts in Malegaon town, Maharashtra, allegedly carried out by members of the Hindu nationalist Abhinav Bharat (Pride of India) in September 2008. Compass spoke with the president of Abhinav Bharat about the alleged terrorist group’s attitude toward Christians.

The Malegaon blasts near a mosque killed six people and injured more than 100. The ATS arrested 11 people, including a serving officer of the Indian Army, from the Abhinav Bharat and other rightwing outfits.

The president of the Abhinav Bharat, Himani Savarkar, told Compass that members of her organization had been falsely accused, saying “The government is lying about their involvement. There is collusion between Muslims and the government.”

Asked if only Muslims were a threat to Hindus, she said, “There is danger from both Muslims and Christians, because of conversions and terrorism.”

Conversion represents a threat in that people converting to Islam change their loyalties from India to Mecca, while the loyalties of converts to Christianity shift from India to the Pope, Savarkar said. She also spoke of a more direct threat in Christianity – “Muslims want to kill the kafirs [unbelievers], and even Jesus asks in the Bible to kill all those who do not believe in Him” – and it is not known how many other Hindu extremists share this fallacy.

The number of Hindus, she added, “is slowly reducing, and one day we will become a minority in our own nation. We do not have any other nation.”

Savarkar, niece of Nathuram Godse, a Hindu nationalist who killed Indian independence leader Mahatma Gandhi in January 1948, said that in her view the main reasons people convert away from Hinduism are poverty and illiteracy.

“They do not know what they are doing,” she said. “We have to awaken Hindus. Hindus need to be made aware of the threats.”

Violent Despair

The use of bombs is a sign of frustration among extremists, said civil rights activist Khairnar, referring to the two successive defeats of the Bharatiya Janata Party (BJP), political wing of the Rashtriya Swayamsevak Sangh (RSS), India’s chief Hindu nationalist conglomerate. The BJP, which ruled the federal government from 1998 to 2004, has lost both the 2004 and 2009 general elections.

“They are now exploding bombs because they know they cannot succeed democratically,” he said, though he added that bomb-making per se was not a new development. “Even Nathuram Godse, the killer of Mahatma Gandhi, launched several bomb attacks before finally succeeding in assassinating him.”

In the case of the Malegaon blasts, Dayal said that the involvement of Hindu religious leaders and former army personnel indicated that terror attacks by rightwing Hindu groups were well planned. Security analysts warn that the extremist groups must be prevented from graduating to bigger terror groups.

On Oct. 21, the Mumbai Mirror daily quoted an ATS officer as saying Hindu extremist groups “are putting up a mild face as an organization while their members are detonating bombs. It’s only a matter of time before they begin to acquire better technology and more lethal bombs. Their influence is growing; there are several politicians and even ex-policemen who owe allegiance to them. They can be dangerous if not stopped now.”

O.P. Bali, former director general of police of Maharashtra, told Compass that until 2003, the year he retired, extreme Hindu nationalist groups like the Bajrang Dal mainly used weapons like sticks, tridents and knives.

“Bomb-making is a newer development, and they are still learning,” Bali said. “Considering the way some local Islamist groups have graduated from making and detonating of small bombs to bigger ones, the efforts of rightwing groups must be nipped in the bud.”

Hindu/Muslim violence has a long history. In 1947, when India became politically independent, British colonial India was divided into “Hindu-majority” India and “Muslim-majority” Pakistan. The partition resulted in the killing of around 1 million people – Hindu, Sikh and Muslim – in violent clashes mainly during the mass migration of around 14.5 million people from India to Pakistan and vice versa.

Engineer said the common notion that increasing modernization in India would put a halt to the growth of extremist groups was mistaken.

“Extremism is a reaction to modernization, and therefore such groups will grow even bigger in the future.”

Dayal seconded Engineer, saying the rightwing extremist groups were trying to keep pace with Islamist groups.

“Fortunately, in most areas, government vigilance, civil society and good relations between communities have kept these terror groups at the margins,” Dayal said. “But with the growth of parties that use identity-based divisive issues such as the Maharashtra Navnirman Sena party, with the apathy of government in BJP-ruled states, and with the middle-class support base for them, I fear such Hindutva terror groups may grow. That has been the historical experience in Western Europe and elsewhere.”

When suspects in the Malegaon blast were formally charged in January 2009, ATS officials told the court that the alleged terrorists’ goal was formation of a Hindu nation – and that the suspects planned to approach Israeli intelligence for help in combating Muslim extremists if the need arose, according to a Jan. 21 article in The Hindu.

Following numerous arrests, The Times of India daily on Oct. 21 quoted senior police officials as saying that Maharashtra was fast becoming a “hub of rightwing organizations’ terror activities.”

“The youth are being indoctrinated by fundamentalist organizations,” an officer told the daily. “The state should act quickly to control rightwing terror.”

Report from Compass Direct News 

New, More Dangerous Hindu Extremist Groups Emerge in India

Christians concerned as rightwing factions splinter to form militant outfits.

PUNE, India, October 29 (CDN) — After more than a decade of severe persecution, India’s Christian minority is growing increasingly concerned over the mushrooming of newer and deadlier Hindu extremist groups.

Gone are the days when Christians had to watch out only for the Vishwa Hindu Parishad (World Hindu Council) and its youth wing, Bajrang Dal, which are closely linked with the most influential Hindu extremist umbrella organization, the Rashtriya Swayamsevak Sangh (RSS). With voter support faltering for the RSS’s political wing, the Bharatiya Janata Party (BJP), moderate and extremist sections within the Hindu nationalist movement are blaming each other, and militant splinter groups have emerged.

Claiming to be breakaway factions of the RSS, new groups with even more extreme ideology are surfacing. The Abhinav Bharat (Pride of India), the Rashtriya Jagran Manch (National Revival Forum), the Sri Ram Sene (Army of god Rama), the Hindu Dharam Sena (Army for Hindu Religion) and the Sanatan Sanstha (Eternal Organization) have launched numerous violent attacks on Christian and Muslim minorities.

The Sri Ram Sene was one of the most active groups that launched a series of attacks on Christians and their property in and around Mangalore city in the southern state of Karnataka in August-September 2008, according to a report, “The Ugly Face of Sangh Parivar,” published by the People’s Union of Civil Liberties (PUCL), in March 2009. In Jabalpur city in the central state of Madhya Pradesh, suspected extremists from the Abhinav Bharat attacked the Rhema Gospel Church on Sept. 28, according to the Global Council of Indian Christians. They had earlier attacked Pastor Sam Oommen and his family in the same city on Aug. 3.

The Hindu Dharam Sena has become especially terrifying for Christians in Jabalpur. Between 2006 and 2008, Jabalpur was plagued by at least three anti-Christian attacks every month, according to The Caravan magazine. In the western state of Gujarat and other parts of the country, the Rashtriya Jagran Manch has also violently attacked Christians, according to news website Counter Currents.

At an ecumenical meeting held in New Delhi on Saturday (Oct. 24), the secretary general of the Catholic Bishops’ Conference of India, Archbishop Stanislaus Fernandes, said the rise of fundamentalism was “seriously worrying” the church in India. The meeting was held to discuss prospects for immediate enactment of federal legislation to counter religious extremism with the proposed Communal Violence (Prevention, Control and Rehabilitation of Victims) Bill.

RSS ‘Too Mild’

The new groups, formed mostly by former members of RSS-connected outfits, find the Hindu nationalist conglomerate too “mild” to be able to create a nation with Hindu supremacy.

The Sri Ram Sene, mainly active in south India, was started by Pramod Muthalik after he was expelled in 2007 from the Bajrang Dal, one of the most radical groups in the RSS family, for being an extremist, according to the daily newspaper DNA. The Hindu Dharam Sena was started by Yogesh Agarwal, former worker of the Dharam Jagran Vibhag (Religion Revival Department) of the RSS, also in 2007, as he felt “the RSS did not believe in violence,” according to The Caravan. He had earlier launched the Dharam Sena, an offshoot of the RSS, in Madhya Pradesh and neighboring Chhattisgarh state in 2006.

The founding members of the Abhinav Bharat, which was started in Pune in 2006, also believe that the RSS is not militant enough. Outlook magazine notes that its members were planning to kill top leaders of the RSS for their inability to implement Hindu extremist ideology. The Rashtriya Jagran Manch, also a breakaway group of the RSS founded in 2007, has close links with the Abhinav Bharat.

Based out of Goa, a western state with a substantial number of Christians, the Sanatan Sanstha provides the ideological base for Hindu militant groups. It has close links with the Sri Ram Sene and publishes a periodical, Sanatan Prabhat, which occasionally spews hate against Christians.

Media reports warn of tensions due to the recent spurt in activity of the splinter groups.

“The hardliners are now getting into more extreme activities,” The Times of India daily quoted V.N. Deshmukh, former joint director of India’s Intelligence Bureau, as saying on Oct. 21.

The most extremist sections are disillusioned with the way the RSS is functioning, said Mumbai-based Irfan Engineer, Director of the Institute of Peace and Conflict Studies. Most RSS cadres were mobilized with an ideology that called for elimination of minorities, mainly Muslims and Christians, he told Compass, adding that many of them were highly disappointed with the way the movement was being led.

He said the BJP was restricted when it led a coalition government at the federal level from 1998 to 2004, keeping it from effectively working towards a Hindu nation. A majority of the BJP’s allies in the National Democratic Alliance were not Hindu nationalists.

“One section of the [Hindu nationalist] movement believes in acquiring state power by participating in parliamentary democracy, and the other wants to create a Hindu nation by violent means,” Engineer said.

It is believed that the divide within the RSS family may deepen even further.

Analysts believe that Hindu nationalism is losing relevance in national politics, as was evident in the two successive defeats of the BJP in the 2004 and 2009 general elections. Consequently, the RSS and the BJP may distance themselves from the hard-line ideology or make it sound more inclusive and less militant.

After this year’s elections, the RSS increasingly has begun to talk about the threat China poses to India and the need for development in rural areas, instead of its pet issues like Islamist terrorism and Christian conversions. This has disappointed sections of the highly charged cadres even more, and the splintering may accelerate.

For the next few years, “we will see more new names and new faces but with the same ideology and inspiration,” said Anwar Rajan, secretary of the PUCL in Pune.

Whether the new groups truly have no connection with the RSS is not fully known – that appearance may be an RSS strategy to evade legal action, said Dr. Asghar Ali Engineer, chairman of the Centre for Study of Society and Secularism in Mumbai.

He said relations between the RSS and the new groups can be compared with the ones between Maoist (extreme Marxist) rebels and the Communist Party of India-Marxist (CPI-M) in India. While the CPI-M distances itself from Maoist violence, it speaks for the rebels whenever security forces crack down on them.

At base, the newer rightwing groups surely have the sympathy of the RSS, said Pune-based S.M. Mushrif, former Inspector General of Police in Maharashtra, who has been observing Hindu extremist groups for years.

Report from Compass Direct News 

INDIA: NEWS BRIEFS

Recent Incidents of Persecution

West Bengal, August 31 (Compass Direct News) – Hindu hardliners have again attacked the Christian community in Bishnupur and threatened to kill them if they continue to practice their faith. About 15 Hindu extremists armed with knives and heavy rods of bamboo and iron shouted anti-Christian slogans as they attacked Khagen Majhi on Aug. 20. Threatening the Christian with violent “incidents like Orissa’s Kandhamal situation,” they commanded that he recant his Christian faith, reported the Evangelical Fellowship of India. Running from one Christian house to another, the enraged Hindu extremists also beat Manik Jana and verbally abused and manhandled Jharna Pradhan. Similar violence took place in the same area on July 29, as well as on Christmas Day of 2006. Area Christians filed a police complaint at Bishnupur police station, but no arrests had been made at press time.

Andhra Pradesh – Suspected Hindu extremists set aflame a newly built church building in Mahasamudram, destroying it on Aug. 20. Best Friends Church was built with the permission of local authorities and was scheduled to be inaugurated on Aug. 30, reported the All Indian Christian Council. The next morning local Christians went to the site to find the church building in ashes. Pastor A. John filed a complaint at Bangarupalem police station. A police investigation is underway.

West Bengal – Hindu extremists from the Rashtriya Swayamsevak Sangh on Aug. 20 attacked two Christians in Amtala, Kolkatta. The All India Christian Council reported that eight extremists accused two unidentified Christians of forceful conversion and filed a police complaint against them after forcing villagers to sign a letter of complaint. Christian leaders have taken the matter to authorities, and a police investigation is underway.

Karnataka – Hindu extremists attacked the Mayer Memorial Church building and set fire to three vehicles belonging to Christians on Aug. 17 in Hubli. A Compass contact said the extremists were opposing a Christian rally organized by the church. Area Christians said they believe the attack was planned well in advance as the extremists arrived with media. The church cancelled the rally, and police provided protection to the Christian community.

Karnataka – Members of the Hindu extremist Vishwa Hindu Parishad (VHP or World Hindu Council) on Aug. 16 disrupted a Christian prayer meeting in Karwar, accused the pastor of forceful conversion and threatened him with violence if he continued Christian activities. The Global Council of Indian Christians reported that at 7 p.m. a church leader of New Life Fellowship identified only as Pastor Quadros was conducting a prayer meeting in a church member’s house when the extremists barged in. The intolerant Hindus accused the pastor of forceful conversion, searched the house and took Christian literature. The VHP filed a complaint against the pastor, and police ordered him to inform them about any future Christian activities.

Kerala – Police on Aug. 12 arrested Christians based on false allegations of destroying Hindu holy books in Vythiri, Wayanad district. The Global Council of Indian Christians reported that Hindu extremists of the local Hindu Ikkaya Vedhy group surrounded the house of Karthyani Amma, a Hindu in Laksham colony, near Vythiri police station, as her son – a convert to Christianity identified only as Manikandan – was cleaning her home along with evangelist Sunny Joseph. The extremists created a disturbance, and Christians became embroiled in the subsequent uproar. Amma filed a complaint against the Christians for destroying Hindu holy books and articles used in rituals. The Christians were charged with promoting communal disharmony, house trespass, and damaging property.

Karnataka – Hindu hardliners on Aug. 9 disrupted the worship of Indian Missionary Service and beat Pastor V. James in Gulbarga. The Evangelical Fellowship of India (EFI) reported that at around 10 a.m., about 20 Hindu extremists shouting anti-Christian slogans stormed into the worship service and accused the pastor of forceful conversion. They dragged the pastor out to the street, kicking, punching and beating him. The pastor fled to Ganigapura police station and filed a complaint against the extremists, reported EFI. Later in the evening, the intolerant Hindus went to the pastor’s house and assaulted him again, chasing him, his wife and four children away from the village. The pastor has relocated to another area. No arrests had been made at press time.

Karnataka – Hindu extremists on Aug. 9 ordered 20 Christians to leave their home village of Gulbarga because they had put their trust in Christ. The All Indian Christian Council (AICC) reported that village leaders in alliance with the Hindu extremists were reacting against a recent baptism service conducted by Pastor Sukruuth Raj. AICC reported Pastor Raj, who was instrumental in the baptized person coming to faith in Christ, as saying “all the believers are from the same village, and they are going to stay there.”

Maharashtra – About 45 Hindu extremists attacked two Gospel for Asia Christian workers, accused them of luring people to convert to Christianity and took their equipment on Aug. 8 in an undisclosed area in Maharashtra, according to a Christian source. Two Christian workers identified as Jayant Mehta and Dayanand Tambe were screening a film about Jesus that was attended by many villagers, reported the source. As the Christians were getting ready to go home, the Hindu extremists rushed at them and snatched their film equipment, then began beating them. They took the Christians to a police station and charged them with bribing people to convert to Christianity, giving fake names of people who would supposedly testify against them. After local Christian leaders intervened, the two Christian workers were released the next morning. The film equipment was returned to the Christians on Aug. 10 after police confirmed that the allegations were false.

Kerala – Hindu extremists armed with swords on Aug. 7 barged into the prayer hall of the Full Gospel Church for God, attacked two Christians and vandalized the facility in Pullad. Hindu newspapers reported that about 25 extremists, two armed with swords, attacked Pastor Joe Kaithavana and a church member identified only as Deepu at around 10:30 p.m. and vandalized the prayer hall. The Christians sustained injuries and received hospital treatment. Koipram police have registered a case against the assailants. Member of Legislative Assembly K. Sivadasan Nair visited the site, condemned the attack and called for the immediate arrest of the extremists.

Karnataka – On Aug. 7 in Haveri, a group of Hindu extremists from the Bajrang Dal accused a pastor from Every Home Crusade church of forceful conversion and threatened to beat him if he continued his ministry in the area. A church representative told Compass that about 25 extremists went to Pastor Ajit Kumar’s house at around 11 a.m., spoke derogatorily about his faith, and warned him not to conduct a worship meeting on Aug. 10 or face serious consequences. The pastor registered a case against the extremists, and the Sunday church service took place on Aug. 10 under police protection. No arrests had been made at press time.

Karnataka – Police arrested two Christians for distributing pamphlets and conducting a medical camp on Aug. 4 in Mosarukunte village, Tumkur district. The Evangelical Fellowship of India reported that Pastor M. Shivanna, Vijay Kumar and some doctors were conducting a medical camp when the Hindu hardliners along with the village head objected to their activity, claiming that they had not obtained prior permission. The extremists later filed a police complaint, accusing the Christians of distributing gospel pamphlets to forcefully convert people to Christianity. Police arrested the two Christians under section 109 of the Criminal Procedure Code to ensure “good behavior from suspected persons,” and later they were released on bail.

Madhya Pradesh – Hindu extremists in Rewa, including a woman said to practice sorcery and witchcraft, burned down the home of a Christian on Aug. 2. The Global Council of Indian Christians reported that when Raj Bahor accepted Christ and began attending the church of Pastor Heeralal Kushwaha, the Hindu woman in the neighborhood found the spells she cast on Bahor prior to his conversion had become ineffective. She and other Hindu extremists opposed to Bahor’s new faith burned down his house, and local Christians filed a police complaint. An investigation is underway.

Andhra Pradesh – Hindu extremists from the Vishwa Hindu Parishad (World Hindu Council or VHP) on Aug. 1 attacked Christians charging large-scale, forceful conversion; they forced the Christians to wear tilak, a Hindu symbol on the forehead, and threatened to kill them if they went ahead with church construction in Mahabubnagar. The All Indian Christian Council reported that Pastor B.Y. Dass of the Smarna Prayer Home Church had obtained land to build a church with permission from the village head. Upon hearing of the Christians’ plan to build a church building, the VHP came to the site with the threats and accusations. At press time local Christian leaders were taking the matter to authorities.

Orissa – The Rev. S.P. Lima of Cross International Ministries, operator of Agape Manor International Residential School, has been arrested and imprisoned since January 2008 in Baragarh and Sambalpur after Hindu extremists falsely accused him of raping a schoolgirl and feeding schoolchildren beef while claiming that it was mutton, according to his brother. Lima’s brother, Dayanidhi Lima, told Compass that Hindu extremists filed a false complaint against his brother because Rev. Lima had refused to meet their demand that they give them 50,000 rupees (US$1,035) to build a Hindu temple. A medical and DNA examination of the girl at Burla Medical College showed no evidence of rape. The girl had left the school on Jan. 5, 2008, and the First Information Report naming the pastor was filed on Jan. 12 of that year. Nevertheless he was arrested on Jan. 28, 2008. Area Christians maintained that the extremists pressured the parents of the girl to falsely accuse the pastor. The Additional District Session Court on June 12 of this year imposed a fine of 10,000 rupees (US$207) and sentenced Rev. Lima to 10 years in prison; he was transferred to Sambalpur Prison, where he is subject to various kinds of punishment.

Report from Compass Direct News 

BANGLADESH: PASTOR THREATENED FOR RAPE ACCUSATIONS

Christian, human rights advocates call medical exam report false.

DHAKA, Bangladesh, February 19 (Compass Direct News) – Christian and human rights advocates said doctors likely fabricated a medical report that falsely concluded there were no signs of rape in the wife of a Bangladeshi pastor whom village Muslims have now threatened for pressing charges.

The Rev. Shankar Hazra of Chaksing Baptist church in Gopalganj district, 100 kilometers (62 miles) south of Dhaka, said influential area Muslims have used threats to try to force him and his wife to withdraw charges of robbery and rape; he delined to name them out of fear of reprisals.

“If I do not withdraw the case, they said they will make a ‘Ganges [river] of blood’ here,” Rev. Hazra said.

Resident medical officer Dr. Ali Akbar of Sadar Hospital in Gopalganj told Compass that a report given to police on Thursday (Feb. 12) stated that a medical examination indicated the wife of Rev. Hazra was not raped.

“There was no sign of forceful intercourse in her body at the time of examination, which means the victim was not raped,” Dr. Akbar said.

Rev. Hazra told Compass that villagers said the examining doctors had been paid to falsify the medical report.

“I heard from some people in the locality that 50,000 taka [US$740] had been given to the doctor to twist the report,” he said.

The pastor accuses area Muslims of tying him up, robbing their living quarters at the church property and gang-raping his wife on Jan. 6. Rev. Hazra said that before leaving, the assailants also desecrated the church building.

Human rights advocate Rosaline Costa, coordinator of Hotline Human Rights in Bangladesh, told Compass that she would not trust the medical report.

“What my long experience as a human rights activist says is that these sorts of medical reports are always distorted by the accused if the victim is poor or a minority,” she said. “Police and medical doctors are influenced financially to give negative reports.”

Such false medical reports are a common phenomenon in Bangladesh for both minorities and also for poor majority people, Costa said.

“The victim is very poor and a minority Christian, so the report could be manipulated by the doctors,” said Costa. She said a DNA test not subject to bias would be conclusive.

The Rev. Milton Biswas, general secretary of Bangladesh Baptist Church Sangha, also suggested a DNA test.

“I am gob-smacked and shocked at how the report became false,” he said. “She might not have been raped, but a DNA test is needed to say whether she was raped or not.”

Rev. Hazra, 55, said he and his 45-year-old wife had gone to a toilet outside their home at about 2 a.m. on Jan. 6 when a man suddenly thrust a rifle at him. Seven or eight people tied him to a pillar on the porch, blindfolded his wife and took her inside the house, he said.

After the assailants had robbed the house of valuables and raped his wife, Rev. Hazra said, he managed to untie himself and found his wife lying unconscious on the bed.

Rev. Hazra and his wife said all of the assailants were Muslims, but that villagers tried to implicate non-Muslims and portray the attack as resulting from internal conflicts among Christians.

Police, influential villagers and local Muslim-owned media are trying to conceal likely anti-Christian motives for the crime, he said, by falsely accusing two Christians and a Hindu of participating. Police wrote the First Information Report (FIR) implicating the Christians and Hindu based on lies from villagers, and Rev. Hazra signed it without reading it due to his shaken state, he said.

Rev. Hazra’s wife, Depali Hazra, later filed an affidavit contesting the FIR in which the two Christians and one Hindu, along with a known criminal who is Muslim, were accused of the gang rape and theft. The Christians and Hindu were not involved in the rape and robbery, she reported in the affidavit.

“I was seriously ill after [the] gang rape, and my husband’s mind was unhinged at that time,” she reported. “Only [the] Muslim man Ilias Mridha and his yes-men did it. When I recuperated a little bit from illness, I came to know about the names of the Christians and Hindu in the case. Spontaneously and knowledgably I did this affidavit to get rid of those Christian and Hindu names from the case copy.”

Local Christians said Mridha, 38, who has been jailed several times, commits crimes under the direction of influential Muslims in the area.  

Report from Compass Direct News

INDIA: SOLDIER PROTECTING CHRISTIANS MUTILATED, KILLED IN ORISSA

Two women whose houses were burned die from illnesses in hospital.

NEW DELHI, October 20 (Compass Direct News) – A paramilitary soldier assigned to protect Christians from Hindu violence in Kandhamal district, Orissa was mutilated and killed by a mob in Sisapanga village on Oct. 13.

The body of the Central Reserve Police Force (CRPF) soldier was recovered from a nearby forest. He was believed to have been hacked to death by tribal people in the wake of the worst anti-Christian violence in the history of modern India.

“Police recovered the body on Monday night – he has injuries on his torso and head,” District Superintendent of Police S. Praveen Kumar told national media. “It appears he was first beaten up by sticks and then killed by a sharp weapon.” Sisapanga village is under Raikia police jurisdiction.

“The soldier had been to Sisapanga village, accompanied by a driver, to buy provisions. A group of six-seven men attacked him from behind, dragged him into the jungle and hacked him to death,” Kumar told the Times of India (TOI). “The driver fortunately managed to escape.”

The death marks the first time that central security personnel have been targeted in Orissa in the riots that have raged since Hindu extremists insisted on blaming Christians for the Aug. 23 murder of Hindu leader Laxmanananda Saraswati, even though Maoists admitted killing him and four associates.

“The murder of the CRPF jawan [soldier] comes in the wake of persistent demands from the tribals to withdraw the paramilitary force,” a police spokesman told TOI. “The CRPF has made mass arrests, mostly of tribals, during the past two weeks.”

A local source who wished to be unnamed told Compass that the attackers have warned authorities through local media that they will carry out more killings of CRPF soldiers if the forces are not withdrawn.

 

Assurances, Assurances

Amid several assurances of protection by the state government, a mob demolished a Church of North India building on Oct. 11 in Sikuli village, Kalahandi district. The same day, the gang burned down two Christian houses in the village.

Two women who previously were driven from their homes when Hindu extremists set the structures on fire have died from illnesses. Minakshi Pradhan, 22, contracted malaria after fleeing to a refugee camp, later developing typhoid, and was admitted to MKCG Berhampur hospital, where she died on Thursday (Oct. 16).

“She has a 4-year-old child she left behind,” said a local source who wished to remain unnamed. Also survived by her husband, Anand Pradhan, Minakshi Pradhan was from Murudipanga village, Raikia block division, in Kandhmal district.

Another woman, Mili Pradhan, had a tumor detected in her stomach after her house was burned on Aug. 29, and she and husband Joshi Pradhan had to flee to Berhampur. Doctors operating on her detected blood cancer, and she died in the same hospital on Wednesday (Oct. 15.) She left behind an 18-month-old daughter.

Orissa Chief Minister Naveen Patnaik said in an interview to television channel NDTV that half of the 1,000-odd people arrested in the state for rioting belonged to the Hindu extremist Bajrang Dal and Vishwa Hindu Parishad (VHP). He added that he considered the Bajrang Dal a fundamentalist group.

In reaction, Subash Chouhan, national co-coordinator of the Bajrang Dal, said “It’s not the Bajrang Dal but Naveen Patnaik who is the real fundamentalist. . . . He is trying to show his secular character by trying to implement the Christian organizations’ agenda.”

Orissa police have arrested one of the “most wanted” in the anti-Christian riots in the state’s Kandhmal district.

Manoj Pradhan, a key tribal leader, was reportedly arrested at a lodge in Berhampur on Wednesday (Oct. 15) night.

“While investigating the case, we are finding it to be one of the most complicated cases in the state,” Arun Ray, inspector general of police, told media. “The crime was planned much before. We have identified the perpetrators of the crime. We have arrested three people and are likely to arrest some more people in the near future.”

 

Raped Nun

In the rape of a nun shortly after the violence began, police have arrested Mitu Patnaik and also implicated Muna Ghadei and Saroj Ghadei. They were arrested at a mill in Kerala’s Palakkad district on Oct. 11.

Police had earlier arrested five men – Juria Pradhan, Kartik Pradhan, Biren Kumar Sahu and Tapas Kumar Patnaik on Oct. 3 and Santosh Pradhan on Oct. 7 for their alleged roles in the crime.

Orissa police sent Patnaik to Cuttack for DNA testing. The alleged rape of the 29-year-old woman took place at the building of a Non-Governmental Organization in Kanjamendi village in Kandhamal on Aug. 25.

The nun has refused to come forward to identify any of the suspects, though inspector general Ray told media they were hopeful of making their case.

“The nun must be very scared and disturbed,” he said. “If necessary, the trial of the case can be held in any other place in Orissa.”

The nun has expressed her disbelief by saying that she would not like to “meet” the state police that remained a mute witness of her predicament.

“The nun wrote from a hospital, as she is yet to recover from the shock,” Archbishop Raphael Cheenath reportedly said.

At the same time, Hindu radicals want to reintroduce a tribal law that would obligate a rape victim to marry the man who rapes her.

On Oct. 13, some 5,000 radical Hindu women demonstrated in K. Nuagaon demanding that “the victim marry her rapist in accordance with local tradition.”

 

Refugee Camp Conditions

“With around 3,000 people in one camp, public health is pathetic in refugee camps,” attorney B. D. Das told Compass. “There is an epidemic of malaria, and water-borne diseases are spreading rapidly.”

One local source told Compass, that excess people in the refugee camps are forced to go back to their homes.

“As their homes are burnt, a plastic tent along with 10 days ration (food supply) is given to them and they are sent away,” he said. “Those in the relief camps are still better off as they at least have food. Those sent back do not have income, shelter and food.”

Christian leaders are concerned with the unhygienic conditions of the camps and people dying due to inadequate facilities.

Dr. John Dayal, member of the National Integration Council, told Compass that the chief minister of Orissa admitted that at least 10,000 people are still in government-run refugee camps, and that tens of thousands are in the forests or have migrated to towns outside Kandhamal.

“The government has admitted 40 dead, though we have details of 59 men and women mercilessly killed in the seven weeks of unabated mayhem,” he said. “For us, peace would be when the last refugee is back in his home, secure in his faith, with a livelihood restored, his children’s future secured as it should be in a secular India.”

 

Forced Reconversions

On Oct. 12 a student association, the Kandhamal Chatra Sangharsa Samiti, called for a moratorium on conversions by Christians to honor Saraswati’s lifetime of work trying to halt Christian conversions.

Christians have been forced to reconvert to Hinduism, burn Bibles and prayer books, have their heads shaved and drink cow urine (for Hindu purification). They have been placed for days under the watchful eye of Hindu groups so that they do not have any contacts with their former co-religionists.

Attorney Das noted, “700 forcible reconversions have taken place in Kandhmal since the riots began.”

Hindu extremist groups denied ever having attempted to “reconvert” tribal people, many of whom were not Hindus in the first place. “Why should we do it?” Subhash Chouhan, national co-convenor of Bajrang Dal said to the Times of India. “The Christian churches and missionaries have let them down, and the natives are making a conscious choice to become Hindus. We don’t have a single office in Kandhamal.”

Dr. Dayal told Compass that he has been distressed that while the continuing anti-Christian violence in Kandhamal, Orissa, Karnataka was forcefully detailed by Christians as well as by leaders of leftist parties, and human rights activists, “there was no assurance forthcoming as to when the more than 50,000 internally displaced persons, refugees in their homeland, can return home without being forced at gunpoint by the Bajrang Dal to become Hindus.”

Report from Compass Direct News

CROCODILE ATTACK: HUMAN REMAINS FOUND IN CROCODILE

A 4.3m long crocodile has been caught and tested following the disappearance of Arthur Booker in the Endeavour River near Cooktown (Queensland, Australia) two weeks ago. Male human remains have been found within the crocodile and police have been notified of the find. DNA tests are now to be carried out to confirm the identity of the human remains, though it is more than likely to be those of Arthur Booker.

MYSTERY SOLVED: PLANE IS THAT OF STEVE FOSSETT

There is now more information on the story I posted yesterday regarding the disappearance of Steve Fossett at:

https://pbaptist.wordpress.com/2008/10/02/steve-fossett-mystery-solved/

The wreckage discovered during the renewed search for Steve Fossett (following the discovery of several items belonging to Steve Fossett by a bushwalker) has turned out to be that of the missing Steve Fossett. Human remains have also been found in the wreckage with DNA testing to be used to confirm whether the remains are indeed those of Steve Fossett.